Next-gen Pathway Analysis
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Ontological analysis of gene expression data: current tools, limitations, and open problems.
Bioinformatics 21 (18), 3587-3595
A systems biology approach for pathway level analysis.
Genome Research, 2007, Vol. 17 (10), pages 1537-1545.
Global functional profiling of gene expression.
Genomics 81 (2), 98-104
Reliability and reproducibility issues in DNA microarray measurements.
TRENDS in Genetics 22 (2), 101-109
Data analysis tools for DNA microarrays.
(Book) CRC Press
Profiling gene expression using onto-express.
Genomics 79 (2), 266-270
Onto-tools, the toolkit of the modern biologist: onto-express, onto-compare, onto-design and onto-translate.
Nucleic acids research 31 (13), 3775-3781
A novel signaling pathway impact analysis (SPIA).
Bioinformatics (2009), Vol. 25 (1), pages 75-82.
Use and misuse of the gene ontology annotations.
Nature Reviews Genetics 9 (7), 509-515
Onto-Tools: New Additions and Improvements in 2006.
Nucleic Acids Research, Vol. 35, pages W206-W211, July 2007.
Statistics and data analysis for microarrays using R and bioconductor.
(Book) CRC Press
Analysis and correction of crosstalk effects in pathway analysis.
Genome Research, 2013, Vol. 23 (9)
A system biology approach for the steady-state analysis of gene signaling networks.
In Proceedings of the Congress on pattern recognition 12th Iberoamerican conference on Progress in pattern recognition, image analysis and applications
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